| # | biogem | description | by | cite | status | version | released | issues | source | commit | dl*) | 90d*) | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Bioinformatics library
(...)
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6 months
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1681
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Biogem is a software generator for Ruby in bioinformatics
(...)
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6 days
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996
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Gff3 parser for big data
(...)
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6 months
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489
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This is a development release
(...)
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2 years
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182
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Binder of samtools for Ruby, on the top of ffi
(...)
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5 days
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832
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Library for visualizing genomic regions
(...)
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4 years
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178
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The Ruby ucsc api: accessing the ucsc genome database using Ruby
(...)
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5 months
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524
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BioRuby assembly plugin
(...)
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13 months
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246
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Webservice client library for intermine data-warehouses
(...)
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5 weeks
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686
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Log4r wrapper with extra features for roles and sane error handling
(...)
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6 months
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283
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Lightweight Ruby api for ncbi eutils
(...)
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10 months
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190
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Api to ensembl databases
(...)
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14 months
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143
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Genome scaffolding for human beings
(...)
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6 months
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214
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Very fast blast xml parser and library for big data
(...)
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6 months
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254
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Geneexpression illuminahumanannotation
(...)
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13 months
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121
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A BioRuby plugin for calculating the isoelectric point and the charge of a protein sequence
(...)
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12 months
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123
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Ruby binding for bwa mapping software
(...)
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10 months
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180
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A BioRuby plugin: handling genomic interavals and overlaps
(...)
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10 months
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178
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Running and parsing of the protein transmembrane domain predictor octopus
(...)
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9 months
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165
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Pipeline to remove contaminations from est libraries
(...)
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11 weeks
|
331
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Does high pairwise alignment of sequencing reads with a template
(...)
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2 years
|
50
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A plugin that allows you to parse large blast xml output files lazily, reading only what you need
(...)
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8 months
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167
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BioRuby plugin for reading and writing nexml (http://nexml.org)
(...)
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|
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5 months
|
172
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A tool to classify and manipulate pfemp1 dbl-alpha sequence tags
(...)
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2 days
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239
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Hello world plugin for the BioRuby (just for fun :-)
(...)
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13 months
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62
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A BioRuby plugin for interaction with the transmembrane predictor tmhmm
(...)
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10 months
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112
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BioRuby plugin for sun grid engine
(...)
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14 months
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63
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BioRuby core plugins, most and stable plugins. blastxmlparser, bwa, samtools
(...)
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5 months
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123
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A wrapper for the signal peptide prediction algorith signalp
(...)
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6 weeks
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142
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Programmatic interface to the cnls nuclear localisation signal prediction software
(...)
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12 months
|
60
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A method to get the nucleotide sequence of translations done by the emboss bioinformatics package program transeq
(...)
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10 months
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56
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Parse affymetrix cel/cdf files
(...)
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10 weeks
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159
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Low memory sequence emitters
(...)
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new
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2 weeks
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219
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Biological extensions for the intermine webservice client library
(...)
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6 months
|
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50
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Support for multiple sequence alignments (msa)
(...)
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new
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2 weeks
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176
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Restriction enzyme dataset
(...)
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5 months
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63
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BioRuby core ext: plugins which require external library or tools so are not pure Ruby plugins
(...)
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5 months
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63
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Digests dna based on restriction enzyme cut patterns
(...)
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5 months
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60
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Meta package for biolinux distribution
(...)
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5 months
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62
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A fast parser for fasta and fastq files
(...)
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7 weeks
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158
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Implementation of the plasmoap algorithm
(...)
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6 weeks
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157
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One-line summary of your gem
(...)
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3 months
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64
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Decoding the dbsnp bitfield
(...)
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3 months
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63
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Enables the localisation predictor wolf psort to be run locally
(...)
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new
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4 weeks
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123
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A Ruby api to the ensembl database
(...)
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11 weeks
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63
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Wrapper around the exportpred algorithm for predicting p. falciparum exported proteins
(...)
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new
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4 weeks
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64
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Hydropathy scale for BioRuby
(...)
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new
|
3 weeks
|
61
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A simple biogem that allows computation of the aliphatic index of a protein
(...)
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new
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3 weeks
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60
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pre
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27
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pre
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13
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*) gem downloads (dl total & dl last 90 days) from
rubygems.org
as of
2012-02-22